Jamestown, Virginia — the first successful English colony in North America — was a difficult place, to say the least. Most of the colonists who arrived in 1607 died shortly thereafter.

Now archaeologists have discovered the remains of some of the colony's first leaders — Jamestown's elite.

These days, Jamestown is a historical site, where the emerald green grass rolls down to the James River and a steady breeze keeps the mosquitoes at bay. Preservation Virginia, a private nonprofit, runs the site, and Bill Kelso is the project's top archaeologist, with thick white hair and the look of someone who works outdoors in the southern sun.

Five years ago, Kelso hit a jackpot. "In 2010," he says, as we stroll out to the riverbank, "we found a series of gigantic postholes." The posts in those holes had been 4 feet square. They had supported a building. From the dimensions, Kelso determined it was the site of the colony's first church, built in 1608.

The church was long gone. However, he says, "We could see where there were four burials in the very east end of this rectangular pattern." Disturbed earth looks different, he says, even after centuries.

This had been an Anglican church, they knew, and the east end, where the graves were, would have been the chancel — the most holy part, as Kelso tells it. "That's where you'd have the Communion table and the altar and those kinds of things — at the end."

To be buried in the chancel, you had to be special. "The chancel is reserved for the really high-status people," says Kelso. "So we decided we were going to excavate these."

With help from the Smithsonian Institution's National Museum of Natural History, Kelso and his colleagues exhumed the remains of four men. The bones were in bad shape, and there was no way to identify who they'd been, nor any sign of how they had died. But a plaque near the church site gives some hints — a historical account of what happened at Jamestown, penned in 1607 by colonist George Percy.

Kelso reads from the plaque: "Our men were destroyed with cruel diseases, such as swellings ... burning fevers and by wars. And some departed suddenly; but for the most part they died of mere famine."

England's Virginia Company had sent the men to America to find wealth. Most died within three years. Life was hell. The church was their spiritual refuge — and part of the colony's reason for being there, according to James Horn, the president of the Jamestown Rediscovery Foundation, a nonprofit affiliated with Preservation Virginia.

"It's not just about the commercial," he says of the colony's purpose. "It's about establishing English society in America. And English society without the Church of England at this time is unthinkable."

So who would merit burial in the chancel?

The graves, it turned out, offered some early clues.

In one, the researchers found a silk sash woven with silver sequins. In another, they found part of a staff — the sort a military officer would hold. And along with it, there was an especially intriguing object.

Merry Outlaw, a curator of collections for Jamestown Rediscovery, keeps the object — a silver box — locked up in the Jamestown "vault," as the site's collection of artifacts is known. The box is 2 inches long, an inch wide. It had been atop the coffin in one of the graves.

Outlaw has seen thousands of artifacts from Jamestown. This one is top of the heap.

"It's a 10," she says. "It's unique; nothing else like it." That's because of what's inside the silver box, she says: a tiny lead capsule and some bone fragments (seen only via a CT scanner, after researchers decided the box was too fragile to open).

Kelso says the capsule is "a lead vessel that would hold holy water, oil or blood; and the bone would be that of a saint. Put together, this is a very holy object." There's a letter "M" scratched into the surface of the box that holds the capsule. Kelso smiles: "That stands for 'mystery,' " he says. No one knows what the "M" stands for.

But the object itself is clearly a reliquary — a container for holy relics in the Roman Catholic Church. And that is puzzling. The colonists were Anglicans — members of the Church of England. Many Anglicans at the time considered Roman Catholics their spiritual enemies.

So these were the clues in the dirt. Back at the Smithsonian in Washington, D.C., forensic anthropologist Doug Owsley started work on the bones. One clue: The bones had a lot of lead in them. In those days, people sometimes ate from pewter or glazed bowls and cups, which, Owsley explains, contained lead.

People living in that community at that time would all have had some exposure to lead, Owsley says. "But if you're from a high-status family, you're going to get more." That's because metalware was more expensive than implements made from other materials.

The bones also showed high levels of nitrogen, which Owsley says indicates these men grew up with a richer diet than most.

And their arm and leg bones were not as robust as you would expect to find on laboring men — with the exception of one man, who had a thigh bone that showed signs of big muscles. In general, the men were hefty, Owsley says, "but they are not muscled-up strongly. That's characterizing their background and lifestyle."

The clues are small, Owsley says, "but we look at all these lines of evidence and tie them together."

And by combining the physical evidence with historical documents in the U.S. and England, the team finally identified the buried men:

The Rev. Robert Hunt: The first pastor to the colony, an Anglican priest, he arrived in 1607. Hunt soon lost all his possessions in a fire. The next year he died at about age 39.

Capt. William West: He was a gentleman, and a relative of the colony's first governor. West died in 1610 at about age 24, fighting Indians. A silver sash was in his coffin.

Sir Ferdinando Wainman: A soldier, horseman (thus the strong thighs) and an English knight, Wainman was in charge of ordnance and horses. He died in 1610, and was about 34.

And, finally, Capt. Gabriel Archer: His family, in fact, was Roman Catholic and, according to records found in England, had been persecuted for failing to attend Anglican church services. It was his grave where the reliquary and the staff were found. Archer was about 34 years old when he died in 1609.

These, then, were the elite in this first and most tenuous foothold in the New World.

Owsley says the identifications are not airtight — he says he's about 85 percent sure.

"We surely don't have all the answers, and we certainly want this to open the discussion and lead to more research," Owsley says. He's undertaking a larger study of early settlers in the region — research on everything from tooth decay to bone shape to bone chemistry — that may help illuminate the lives, as well as the deaths, of the first English settlers in America.

Copyright 2015 NPR. To see more, visit http://www.npr.org/.

Transcript

MELISSA BLOCK, HOST:

Jamestown, Va., the first successful English colony in North America, was a difficult place, to say the least. Most of the colonists who arrived in 1607 died shortly thereafter from famine, disease or battles with Native Americans. Now archaeologists have identified the remains of some of the colony's most notable casualties. NPR's Christopher Joyce visited the site and brings us this story on the fate of the Jamestown elite.

CHRISTOPHER JOYCE, BYLINE: At Jamestown, the emerald green grass rolls down to the James River, and a steady breeze keeps the mosquitoes at bay. Preservation Virginia runs this historical site, and Bill Kelso is the top archaeologist there. Five years ago, he hit a jackpot.

BILL KELSO: In 2010 we found a series of gigantic postholes.

JOYCE: The posts in those holes had been 4 feet square. They had supported a building - the colony's first church, built in 1608. The church was gone. However...

KELSO: We could see where there were four burials in the very east end of this rectangular pattern.

JOYCE: It had been an Anglican church. The east end would have been the holiest spot, the chancel.

KELSO: The most holy part, you know, that's where you'd have the communion table and the altar and those kinds of things at the end.

JOYCE: To be buried in the chancel, you had to be special.

KELSO: Chancel is reserved for the really high status people. So we decided we were going to excavate these.

JOYCE: With help from the Smithsonian Institution's National Museum of Natural History, they exhumed the remains. They were four men. The bones were in bad shape and no sign of who they were nor what they died from. But an historical account of Jamestown by colonist George Percy on a plaque near the church site gives some hints.

KELSO: This is George Percy in 1607. He reports that our men were destroyed with cruel diseases and swellings, burning fevers and by wars. And some departed suddenly, but for the most part, they died of near famine.

JOYCE: England's Virginia Company had sent the men to America to find wealth. Most died within three years. Life was hell - the church, their spiritual refuge and, according to James Horn, the president of Jamestown Rediscovery Foundation, part of their reason for being there.

JAMES HORN: It's not just about the commercial. It's about establishing English society in America. And English society without the Church of England at this time is unthinkable.

JOYCE: So who would merit burial in the chancel? The graves did offer some clues. In one, they found a silk sash woven with silver sequins. In another, they found part of a leading staff, a wooden staff a military officer would hold. And along with it, the most intriguing object.

MERRY OUTLAW: We keep it locked up.

JOYCE: Merry Outlaw is curator of Jamestown's artifacts. She retrieves a shiny silver box from a cabinet, two inches long, an inch wide. It had been laid on the coffin in one of the graves. Outlaw has seen thousands of artifacts from Jamestown, but this one is top of the heap.

OUTLAW: It's unique, nothing else like it.

JOYCE: It was too fragile to open, so the team did a CT scan of it. Inside, a tiny lead capsule and some bone fragments.

KELSO: Lead vessel - it would hold holy water, oil or blood. And the bone would be that of a saint. Put together, this is a very holy object.

JOYCE: And there is a letter M scratched into it.

KELSO: Yes. That stands for mystery. We don't know what - still an enigma.

JOYCE: But this was quite clearly a reliquary, a containment of holy relics and normally a Catholic object. That was puzzling. The colonists were Church of England. They considered Catholics their spiritual enemies. So these were the clues in the dirt. Back at the Smithsonian in Washington, D.C., forensic anthropologist Douglas Owsley started work on the bones. One clue - lead in the bones - it was high. In those days, people sometimes ate from pewter or glazed bowls and cups which contained lead.

DOUGLAS OWSLEY: You're going to get him some exposure. But if you're from a high status family, you're going to get more.

JOYCE: Because metal ware was more expensive. The bones also showed high levels of nitrogen, suggesting these men had grown up eating more meat than most. And their long bones did not bear the marks of heavy muscle attachments.

OWSLEY: These are good size men, but they are not muscled up strongly. It's characterizing their background and lifestyle. It's a little clue, but we look at all these lines of evidence and tie it together.

JOYCE: By combining the physical evidence with historical documents, the team finally identified these buried men. They were the colony's elite. Reverend Robert Hunt, the first pastor of the colony. He arrived in 1607. He soon lost all his possessions in a fire. The next year, he died at age 39. Captain William West - he was a gentleman and a relative of the colony's first governor. He died in 1610 at age 24 fighting Indians. The silver sash was in his coffin. Sir Ferdinando Wainman, a soldier, horseman and an English knight - he'd been in charge of ordinance and horses. He died in 1610 at age 34. And finally, Captain Gabriel Archer - here was the answer to the puzzle of the reliquary. His family, in fact, was Catholic and had been persecuted for that in England. He was probably the owner. He died in 1609 at age 34, and the reliquary went into the earth with him. Owsley says the ages are approximate and identifications are 85 percent sure. And certainly, questions remain. For example, why was a Catholic there?

OWSLEY: We surely don't have all the answers, and we certainly want this to open the discussion and lead to more research.

JOYCE: Research on everything from tooth decay to bone shape to bone chemistry that will illuminate the lives of the first English settlers in America from what they left behind. Christopher Joyce, NPR News.

BLOCK: And you can take a 3D virtual tour of the archaeological site at NPR.org. Transcript provided by NPR, Copyright NPR.

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